topic: peptide
18 modules sharing the peptide name family (derived from the tree's prefix discipline).
The 'peptide' topic family in the Nishi sovereign ecosystem provides tools for peptide analysis and construction, supporting both primary-structure modeling and multi-chain peptide processing. The nx_peptide module forms the foundation for peptide chemistry, while nx_peptide_chain extends this to handle complex, multi-chain structures. nx_peptide_deconv offers advanced charge-state deconvolution, enhancing the accuracy of peptide identification and sequencing.
auto-narrated by the local model from this topic's module headers; links verified against the wiki index.
narrated overview -- maintained by the narration lane, module links verified against this wiki.
| module | description | lines | funcs |
|---|---|---|---|
| nx_peptide.nx | CHEMISTRY SUITE / PEPTIDE PRIMARY-STRUCTURE rung. Turns | 565 | 23 |
| nx_peptide_chain.nx | CHEMISTRY SUITE / MULTI-CHAIN PEPTIDE rung. Closes | 147 | 13 |
| nx_peptide_chain_test.nx | gate for nx_peptide_chain. The anchor is human | 161 | 4 |
| nx_peptide_deconv.nx | SOTA ANALYTICAL: charge-state DECONVOLUTION. The | 151 | 9 |
| nx_peptide_deconv_test.nx | gate for charge-state deconvolution. The | 150 | 3 |
| nx_peptide_denovo.nx | SOTA: DE NOVO peptide sequencing. Reconstruct the | 162 | 5 |
| nx_peptide_denovo_test.nx | gate for de novo sequencing. The liar-kill is | 162 | 5 |
| nx_peptide_ext.nx | CHEMISTRY SUITE / PEPTIDE EXTENSION rung. Closes the | 217 | 14 |
| nx_peptide_ext_test.nx | gate for nx_peptide_ext. Oxytocin and | 211 | 7 |
| nx_peptide_formula.nx | LIAR-KILLER for the peptide mass stack. Computes a | 176 | 10 |
| nx_peptide_formula_test.nx | THE LIAR-KILLER GATE. Triangulates the peptide | 124 | 3 |
| nx_peptide_identify.nx | SOTA CAPSTONE: end-to-end peptide identification | 138 | 7 |
| nx_peptide_identify_test.nx | gate for the end-to-end identification | 156 | 5 |
| nx_peptide_isotope.nx | SOTA ANALYTICAL rung: the ISOTOPIC ENVELOPE a | 135 | 6 |
| nx_peptide_isotope_test.nx | gate for the isotopic-envelope rung, liar- | 141 | 3 |
| nx_peptide_msms.nx | SOTA ANALYTICAL CAPSTONE: peptide identification by | 220 | 11 |
| nx_peptide_msms_test.nx | gate for the MS/MS identification capstone. The | 145 | 3 |
| nx_peptide_test.nx | gate for nx_peptide. Liar-killing where possible: | 166 | 3 |